INSERT-seq is an
Analyse sequencing data from INSERT-seq library-prep protocol.
Characterize genomic integrations and unanchored integrations.
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Input reads and sequences:
Upload basecalled Nanopore fastq files.
File names must be of the form:
Give all sequences in 5'-3' orientation.
Please refer to
page in order to check which sequences to provide.
Adapter sequence before UMI
Ontarget primer sequence
Upload fastq file
Human Genome hg38
Mouse Genome mm10
Provide adapter sequence after the UMI:
Provide error for primer and adapter detection:
Choose if UMI clustering should run:
UMI clustering options:
Enter options for UMI clustering. Only required if UMI clustering step is performed.
Select UMI type:
Minumum UMI length:
Maximum UMI length:
Minumum UMI bin size:
See example results